SÁNCHEZ CASTILLO, Manuel

PhD in Physics

Research interests

Computer Science Bioinformatics Computational Biology Geoscience

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Welcome

Hi, this is the academic-research website of Manuel Sánchez Castillo.

About me...

I was born in La Línea de la Concepción (Spain) in July, 30th 1981.

I moved to Granada when I was 18 y.o. to start my universitary studies in Physics.

I got my PhD degree in the Physics and Space Sciences program at the University of Granada on 2012.

After two years as a postdoct in the Haematopoietic Stem Cell Laboratory of the University of Cambridge I joined to the Computational Biology group of a biotechnology company in April 2015.

Previous affiliations

Next are my previous previous academic affiliations.

University of Cambridge

Department of Haematology

Cambridge Institute for Medical Research

Haematopoietic Stem Cell Laboratory

CB2 0XY, Cambridge, United Kingdom

ms2188@cam.ac.uk

University of Granada

Department of Applied Physics

Facultad de Ciencias

18071, Granada, Spain

mscastillo@ugr.es

University of Jaen

Department of Applied Physics

Facultad de Ciencias

23071, Jaen, Spain

mscastill@ujaen.es

Aliases

Sanchez-Castillo, M.Sánchez-Castillo, M.Sanchez Castillo, M.Sánchez Castillo, M.Castillo, M. S.

My latest publications

... click here to see my complete scientific record at Google Scholar.

Hot papers

Cell

Cancer Cell

Nature

Press

FDA

Education

Background

PhD

  • Master's Degree in Advanced Methods and Techniques in Physics
  • Master Thesis entitled Advanced Methods in Signal Processing with Applications in Genomics
  • University of Granada (December, 2009)
  • PhD in the Physics and Space Science program
  • PhD Thesis entitled Bayesian methods for inferring gene regulatory networks and protein profiles from gene expression microarrays data
  • University of Granada (December, 2012)

Research

Keywords

A summary of my research interests, in few words.

Computer Science Machine Learning Pattern Recognition Signal Processing Statistical Inference Bayesian Methods Bioinformatics High-throughput Data Analysis NGS Data Analysis Data Integration Computational Biology Leukaemia Breast Cancer Mechanistic Inference Geoscience Remote Sensing Multi/Hyper-spectral Image Analysis

Links

Databases

CODEX
A NGS experiment database for the haematopoietic and embryonic stem cell communities

Training

GOBLET's Training portal
Bioinformatics courses and learning material at GOBLE
Systems Biology
COURSERA's Systems Biology courses from the Icahn School of Medicine at Mount Sinai

Books

NGS wikibook
A collaborative wikibook on NGS
Molecular Cell Biology
Book of molecular cell biology at NCBI's bookshelf
The Matrix Cookbook
A desktop reference for quick overview of mathematics of matrices
Pattern Recognition and Machine Learning
Bishop's book

Institutions

INAB
Spanish's National Institute of Bioinformatics
ISCB
International Society for Computational Biology

VIP

Martin Krzywinski
Science + Art
Quaid Morris
Genemania's guy
Neil Lawrence
Inverse probability
Aaron Broege
The Sensitive Scientist
Ben Garside
Anyone from anywhere can learn anything
Esteban Moro
Network dynamics
Algobeans
Layman tutorials in ML

R packages

dendextend
A R package for extended dedogram options
coloRout
A R package that colorizes the output of a Unix terminal
visNetwork
A R package for network visualization
SetViz
Survey on set visualization
Heatmaps in R
Survey on tools for heatmaps

Resources

MATLAB's ASCII codes
MATLAB's ASCII Character Codes Cheat Sheet
Shell Cheat Sheet
Linux Bash Shell Cheat Sheet
NGS poster
A collection of NGS library preparation methods illustrated in a poster
Machie Learning @ commons math
A library of lightweight, self-contained mathematics and statistics components
The elements of Bioinformatics
An interactive periodic table of common bioinformatics tools and their alternatives
MotiFolio
Biomedical PPT for presentations
VizBi 2017
Visualizing Biological Data Conference
NRNB
National Resources for Network Biology

Mac

HandBrake
Open Source video converter
Itsycal
A tiny men bar calendar
Geany
Text editor using the GTK+ toolkit
Amphetamine
Override your energy saver settings and keep your Mac awake (use Caffeine as an alternative)
Spectacle
Move and size windows with ease
Typora
A truly minimal MD editor